PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 299aa    MW: 32508.4 Da    PI: 6.8406
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.62.2e-4381071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ ++r+da++sl+yeAear+rdPvyG+vg+i+ lq++l+q ++el
  Vradi11g04980.1   8 PCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSASQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVEL 101
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      + +k+e
  Vradi11g04980.1 102 NNAKKE 107
                      *99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7857108IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-438105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPQRFAYV HKVFGASNVA KLLNELSASQ  60
RDDAVKSLAY EAEARLRDPV YGCVGLISVL QHRLRQIQVE LNNAKKELAT YIGPQAFQGL  120
PAPILQQHPN NPFSGSLYGS MAGVTAATHG GQLMIRDGQS PQQHQILEAQ QLAAAVAARE  180
QQEMFRGYEH QQQQEFLRFS GGFDVGSASS AGGFSQISPA AASADQLSPS LALGSFDNPY  240
HMQPPQQGEP HPHNIPFEAQ LLLPPQQKQS PQQSQQSQLP LHQPQSESEE CRSLGPSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520349.10.0PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ37e-77LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0S3T5Q40.0A0A0S3T5Q4_PHAAN; Uncharacterized protein
STRINGGLYMA11G06210.21e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-71ASYMMETRIC LEAVES 2-like 1